Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx58Q6Q899 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Ddx58Q6Q899 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx58Q6Q899 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx58Q6Q899 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC18.18■□□□□ 0.5
Ddx58Q6Q899 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx58Q6Q899 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC18.18■□□□□ 0.5
Ddx58Q6Q899 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx58Q6Q899 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Ddx58Q6Q899 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx58Q6Q899 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Shd-206ENSMUST00000225145 998 ntBASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Wdyhv1-203ENSMUST00000226889 394 ntBASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx58Q6Q899 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Gm12428-201ENSMUST00000119844 727 ntBASIC18.15■□□□□ 0.5
Ddx58Q6Q899 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Gm27631-201ENSMUST00000184163 466 ntBASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Gm7775-201ENSMUST00000218871 853 ntBASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Ddx58Q6Q899 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ddx58Q6Q899 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms