Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Gm8318-201ENSMUST00000182954 872 ntBASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Gm10313-201ENSMUST00000095320 1002 ntBASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Mxra8os-201ENSMUST00000097740 687 ntBASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col28a1Q2UY11 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Gm18622-201ENSMUST00000219361 595 ntBASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col28a1Q2UY11 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Gm11779-201ENSMUST00000118541 368 ntBASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Mir5126-201ENSMUST00000175513 77 ntBASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col28a1Q2UY11 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col28a1Q2UY11 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms