Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cdx1P18111 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC11.92□□□□□ -0.5
Cdx1P18111 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC11.92□□□□□ -0.5
Cdx1P18111 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Cdx1P18111 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC11.92□□□□□ -0.5
Cdx1P18111 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC11.92□□□□□ -0.5
Cdx1P18111 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC11.92□□□□□ -0.5
Cdx1P18111 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC11.92□□□□□ -0.5
Cdx1P18111 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Gm23547-201ENSMUST00000158210 271 ntBASIC11.92□□□□□ -0.5
Cdx1P18111 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Cdx1P18111 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC11.92□□□□□ -0.5
Cdx1P18111 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Cdx1P18111 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC11.92□□□□□ -0.5
Cdx1P18111 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC11.92□□□□□ -0.5
Cdx1P18111 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC11.92□□□□□ -0.5
Cdx1P18111 AC159301.1-201ENSMUST00000225130 1182 ntBASIC11.92□□□□□ -0.5
Cdx1P18111 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Cdx1P18111 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Cdx1P18111 Ksr1-207ENSMUST00000226282 5260 ntBASIC11.92□□□□□ -0.5
Cdx1P18111 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
Cdx1P18111 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Cdx1P18111 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Cdx1P18111 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Cdx1P18111 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Cdx1P18111 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC11.91□□□□□ -0.5
Cdx1P18111 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC11.91□□□□□ -0.5
Cdx1P18111 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Cdx1P18111 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Gm13312-201ENSMUST00000119631 718 ntBASIC11.91□□□□□ -0.5
Cdx1P18111 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Gm18733-201ENSMUST00000173950 856 ntBASIC11.91□□□□□ -0.5
Cdx1P18111 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC11.91□□□□□ -0.5
Cdx1P18111 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC11.91□□□□□ -0.5
Cdx1P18111 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC11.91□□□□□ -0.5
Cdx1P18111 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Cdx1P18111 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Cdx1P18111 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC11.9□□□□□ -0.5
Cdx1P18111 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC11.9□□□□□ -0.5
Cdx1P18111 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
Cdx1P18111 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Cdx1P18111 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.5
Cdx1P18111 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Cdx1P18111 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Cdx1P18111 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Gm18421-201ENSMUST00000204122 625 ntBASIC11.9□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms