Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 AC154572.2-201ENSMUST00000225105 997 ntBASIC16.04■□□□□ 0.16
Chmp6P0C0A3 CT010506.4-201ENSMUST00000225457 351 ntBASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Ap5m1-205ENSMUST00000227431 3757 ntBASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Celf4-206ENSMUST00000224553 1729 ntBASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Chmp6P0C0A3 AC148324.1-201ENSMUST00000219034 4240 ntBASIC16.04■□□□□ 0.16
Chmp6P0C0A3 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Thap2-203ENSMUST00000218989 527 ntBASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chmp6P0C0A3 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 AC159295.1-201ENSMUST00000225326 940 ntBASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Chmp6P0C0A3 Gm45546-201ENSMUST00000211053 2394 ntBASIC16.02■□□□□ 0.15
Chmp6P0C0A3 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chmp6P0C0A3 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chmp6P0C0A3 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chmp6P0C0A3 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chmp6P0C0A3 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chmp6P0C0A3 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chmp6P0C0A3 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC16.02■□□□□ 0.15
Chmp6P0C0A3 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chmp6P0C0A3 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chmp6P0C0A3 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chmp6P0C0A3 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chmp6P0C0A3 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms