Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Clk3O35492 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk3O35492 Gm9856-201ENSMUST00000217077 2578 ntBASIC14.05□□□□□ -0.16
Clk3O35492 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk3O35492 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk3O35492 AC157650.3-201ENSMUST00000225058 1476 ntBASIC14.05□□□□□ -0.16
Clk3O35492 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk3O35492 Gm21451-201ENSMUST00000111062 2775 ntBASIC14.05□□□□□ -0.16
Clk3O35492 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Clk3O35492 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk3O35492 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk3O35492 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Clk3O35492 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Clk3O35492 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Clk3O35492 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC14.04□□□□□ -0.16
Clk3O35492 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Clk3O35492 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Gm6184-201ENSMUST00000120403 1261 ntBASIC14.04□□□□□ -0.16
Clk3O35492 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC14.04□□□□□ -0.16
Clk3O35492 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Clk3O35492 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Clk3O35492 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Clk3O35492 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC14.04□□□□□ -0.16
Clk3O35492 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Clk3O35492 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC14.03□□□□□ -0.16
Clk3O35492 Mir5131-201ENSMUST00000175426 93 ntBASIC14.03□□□□□ -0.16
Clk3O35492 Gm5253-201ENSMUST00000187104 1025 ntBASIC14.03□□□□□ -0.16
Clk3O35492 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Gm2651-201ENSMUST00000203560 838 ntBASIC14.03□□□□□ -0.16
Clk3O35492 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC14.03□□□□□ -0.16
Clk3O35492 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC14.03□□□□□ -0.16
Clk3O35492 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.03□□□□□ -0.16
Clk3O35492 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC14.03□□□□□ -0.16
Clk3O35492 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC14.03□□□□□ -0.16
Clk3O35492 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Clk3O35492 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Clk3O35492 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Clk3O35492 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
Clk3O35492 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Clk3O35492 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Clk3O35492 AC162938.1-201ENSMUST00000213140 2323 ntBASIC14.02□□□□□ -0.16
Clk3O35492 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Clk3O35492 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Clk3O35492 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Clk3O35492 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC14.02□□□□□ -0.16
Clk3O35492 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Clk3O35492 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Clk3O35492 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Clk3O35492 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC14.02□□□□□ -0.16
Clk3O35492 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Clk3O35492 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Clk3O35492 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Clk3O35492 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Clk3O35492 Gm8318-201ENSMUST00000182954 872 ntBASIC14.02□□□□□ -0.17
Clk3O35492 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC14.02□□□□□ -0.17
Clk3O35492 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms