Protein–RNA interactions for Protein: Q9D6Y1

Ccdc3, Coiled-coil domain-containing protein 3, mousemouse

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc3Q9D6Y1 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Gm5779-201ENSMUST00000218467 910 ntBASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Gm5626-201ENSMUST00000222151 1058 ntBASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 AC159621.2-201ENSMUST00000223519 1326 ntBASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ccdc3Q9D6Y1 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Gm7336-201ENSMUST00000107041 1232 ntBASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 CT025535.1-201ENSMUST00000227172 491 ntBASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ccdc3Q9D6Y1 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Gm38058-201ENSMUST00000194323 4368 ntBASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Gm13034-201ENSMUST00000121342 3177 ntBASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Gm6973-201ENSMUST00000117080 721 ntBASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC14.36□□□□□ -0.11
Ccdc3Q9D6Y1 Mir6977-201ENSMUST00000184960 64 ntBASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms