Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Gm45605-201ENSMUST00000210265 4269 ntBASIC15.12■□□□□ 0.01
Vps28Q9D1C8 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 CT030684.1-201ENSMUST00000227292 914 ntBASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Mxra8os-201ENSMUST00000097740 687 ntBASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Gm43195-201ENSMUST00000200614 2332 ntBASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Gm45133-201ENSMUST00000207548 2773 ntBASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Vps28Q9D1C8 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Gm12017-201ENSMUST00000122453 1003 ntBASIC15.1■□□□□ 0.01
Vps28Q9D1C8 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms