Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ddx28Q9CWT6 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ddx28Q9CWT6 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Ddx28Q9CWT6 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Gm11780-201ENSMUST00000136880 516 ntBASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Gm4535-201ENSMUST00000182274 558 ntBASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Gm27459-201ENSMUST00000184860 107 ntBASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Gm28659-201ENSMUST00000188013 759 ntBASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 AC159301.1-201ENSMUST00000225130 1182 ntBASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Gm7461-201ENSMUST00000058918 827 ntBASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Gm10355-201ENSMUST00000097146 517 ntBASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx28Q9CWT6 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Ddx28Q9CWT6 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Ddx28Q9CWT6 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC13.83□□□□□ -0.19
Ddx28Q9CWT6 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Ddx28Q9CWT6 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm44357-201ENSMUST00000195897 142 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm19658-201ENSMUST00000196231 138 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm44367-201ENSMUST00000196836 138 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm44350-201ENSMUST00000197197 138 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm44390-201ENSMUST00000197533 144 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm44313-201ENSMUST00000198018 138 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm44486-201ENSMUST00000198508 138 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm44314-201ENSMUST00000199263 138 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm44394-201ENSMUST00000199558 138 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm44484-201ENSMUST00000199873 138 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm44466-201ENSMUST00000200264 138 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm44359-201ENSMUST00000200671 138 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm12620-201ENSMUST00000119791 1986 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm12612-201ENSMUST00000140182 1986 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 AC153366.2-201ENSMUST00000219461 1984 ntBASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx28Q9CWT6 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 57.3 ms