Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Gm9252-201ENSMUST00000172364 1602 ntBASIC20.75■□□□□ 0.91
Usp47Q8BY87 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Gm37728-201ENSMUST00000195025 2292 ntBASIC20.75■□□□□ 0.91
Usp47Q8BY87 AC159621.2-201ENSMUST00000223519 1326 ntBASIC20.75■□□□□ 0.91
Usp47Q8BY87 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Gm13453-201ENSMUST00000118708 357 ntBASIC20.74■□□□□ 0.91
Usp47Q8BY87 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC20.74■□□□□ 0.91
Usp47Q8BY87 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Gm27631-201ENSMUST00000184163 466 ntBASIC20.74■□□□□ 0.91
Usp47Q8BY87 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC20.74■□□□□ 0.91
Usp47Q8BY87 AC123645.1-201ENSMUST00000228469 605 ntBASIC20.74■□□□□ 0.91
Usp47Q8BY87 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp47Q8BY87 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Gm9768-201ENSMUST00000206007 2861 ntBASIC20.74■□□□□ 0.91
Usp47Q8BY87 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp47Q8BY87 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Gm10275-202ENSMUST00000168697 495 ntBASIC20.73■□□□□ 0.91
Usp47Q8BY87 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Gm17837-201ENSMUST00000186435 985 ntBASIC20.73■□□□□ 0.91
Usp47Q8BY87 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Gm45453-201ENSMUST00000211758 853 ntBASIC20.73■□□□□ 0.91
Usp47Q8BY87 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 AC090659.2-201ENSMUST00000225378 1186 ntBASIC20.73■□□□□ 0.91
Usp47Q8BY87 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Gm10275-201ENSMUST00000092620 635 ntBASIC20.73■□□□□ 0.91
Usp47Q8BY87 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp47Q8BY87 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Gm12151-201ENSMUST00000121374 290 ntBASIC20.72■□□□□ 0.91
Usp47Q8BY87 Gm27306-201ENSMUST00000183970 107 ntBASIC20.72■□□□□ 0.91
Usp47Q8BY87 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Gm16476-201ENSMUST00000221544 139 ntBASIC20.72■□□□□ 0.91
Usp47Q8BY87 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp47Q8BY87 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp47Q8BY87 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC20.71■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms