Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
ShhQ62226 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC13.78□□□□□ -0.2
ShhQ62226 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC13.78□□□□□ -0.2
ShhQ62226 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC13.78□□□□□ -0.2
ShhQ62226 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Gm13597-201ENSMUST00000121239 375 ntBASIC13.78□□□□□ -0.2
ShhQ62226 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC13.78□□□□□ -0.2
ShhQ62226 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC13.78□□□□□ -0.2
ShhQ62226 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
ShhQ62226 Gm7774-201ENSMUST00000200064 533 ntBASIC13.78□□□□□ -0.2
ShhQ62226 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC13.78□□□□□ -0.2
ShhQ62226 AC126408.1-201ENSMUST00000225184 523 ntBASIC13.78□□□□□ -0.2
ShhQ62226 AC151836.1-202ENSMUST00000226259 753 ntBASIC13.78□□□□□ -0.2
ShhQ62226 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC13.78□□□□□ -0.2
ShhQ62226 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
ShhQ62226 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
ShhQ62226 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 AC159621.2-201ENSMUST00000223519 1326 ntBASIC13.78□□□□□ -0.2
ShhQ62226 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
ShhQ62226 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC13.78□□□□□ -0.2
ShhQ62226 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
ShhQ62226 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC13.78□□□□□ -0.2
ShhQ62226 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC13.78□□□□□ -0.2
ShhQ62226 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
ShhQ62226 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
ShhQ62226 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
ShhQ62226 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
ShhQ62226 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC13.77□□□□□ -0.2
ShhQ62226 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.2
ShhQ62226 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC13.77□□□□□ -0.21
ShhQ62226 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
ShhQ62226 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ShhQ62226 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
ShhQ62226 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC13.77□□□□□ -0.21
ShhQ62226 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC13.77□□□□□ -0.21
ShhQ62226 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
ShhQ62226 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC13.77□□□□□ -0.21
ShhQ62226 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ShhQ62226 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC13.77□□□□□ -0.21
ShhQ62226 Gm10499-201ENSMUST00000174094 934 ntBASIC13.77□□□□□ -0.21
ShhQ62226 Gm5177-201ENSMUST00000183092 997 ntBASIC13.77□□□□□ -0.21
ShhQ62226 Gm9682-201ENSMUST00000197505 556 ntBASIC13.77□□□□□ -0.21
ShhQ62226 Gm5628-201ENSMUST00000222318 1049 ntBASIC13.77□□□□□ -0.21
ShhQ62226 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ShhQ62226 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ShhQ62226 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
ShhQ62226 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ShhQ62226 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
ShhQ62226 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ShhQ62226 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
ShhQ62226 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
ShhQ62226 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ShhQ62226 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
ShhQ62226 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
ShhQ62226 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
ShhQ62226 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
ShhQ62226 Gm5366-201ENSMUST00000215494 1338 ntBASIC13.76□□□□□ -0.21
ShhQ62226 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC13.76□□□□□ -0.21
ShhQ62226 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
ShhQ62226 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
ShhQ62226 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC13.76□□□□□ -0.21
ShhQ62226 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
ShhQ62226 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
ShhQ62226 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
ShhQ62226 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
ShhQ62226 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
ShhQ62226 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
ShhQ62226 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
ShhQ62226 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 67.5 ms