Protein–RNA interactions for Protein: Q5R1H8

Trav8d-1, T cell receptor alpha variable 8D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-1Q5R1H8 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trav8d-1Q5R1H8 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Trav8d-1Q5R1H8 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.47
Trav8d-1Q5R1H8 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Trav8d-1Q5R1H8 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trav8d-1Q5R1H8 Carlr-201ENSMUST00000181515 2574 ntBASIC12.13□□□□□ -0.47
Trav8d-1Q5R1H8 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trav8d-1Q5R1H8 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trav8d-1Q5R1H8 Gm19863-201ENSMUST00000192480 2218 ntBASIC12.13□□□□□ -0.47
Trav8d-1Q5R1H8 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trav8d-1Q5R1H8 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC12.13□□□□□ -0.47
Trav8d-1Q5R1H8 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Trav8d-1Q5R1H8 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Trav8d-1Q5R1H8 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Gm12644-201ENSMUST00000119935 606 ntBASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 AC127349.1-201ENSMUST00000224590 266 ntBASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Gm42632-201ENSMUST00000201707 2411 ntBASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Trav8d-1Q5R1H8 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Gm17971-201ENSMUST00000190239 806 ntBASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Trav8d-1Q5R1H8 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trav8d-1Q5R1H8 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav8d-1Q5R1H8 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav8d-1Q5R1H8 Ntrk2-209ENSMUST00000225950 2640 ntBASIC12.1□□□□□ -0.47
Trav8d-1Q5R1H8 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav8d-1Q5R1H8 Gm13337-201ENSMUST00000119183 1594 ntBASIC12.1□□□□□ -0.47
Trav8d-1Q5R1H8 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 67 ms