Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Snora78-201ENSMUST00000158630 128 ntBASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 AC121598.1-201ENSMUST00000228224 1019 ntBASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Gm19430-201ENSMUST00000193847 2137 ntBASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Gm5049-201ENSMUST00000195878 1590 ntBASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Dancr-204ENSMUST00000132389 2347 ntBASIC18.58■□□□□ 0.57
Ddb1Q3U1J4 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ddb1Q3U1J4 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ddb1Q3U1J4 Gm5912-201ENSMUST00000122282 1438 ntBASIC18.58■□□□□ 0.57
Ddb1Q3U1J4 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ddb1Q3U1J4 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC18.58■□□□□ 0.57
Ddb1Q3U1J4 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 Gm45784-201ENSMUST00000188360 142 ntBASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 Gm37424-201ENSMUST00000191727 561 ntBASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 AC123645.1-201ENSMUST00000228469 605 ntBASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 Gm43195-201ENSMUST00000200614 2332 ntBASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ddb1Q3U1J4 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Gm27486-201ENSMUST00000184923 80 ntBASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Ddb1Q3U1J4 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Gm17795-201ENSMUST00000214505 757 ntBASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 AC140451.2-201ENSMUST00000228030 664 ntBASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 AC154806.6-201ENSMUST00000228192 202 ntBASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ddb1Q3U1J4 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Gm38230-201ENSMUST00000193572 1159 ntBASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 AC159896.2-201ENSMUST00000214753 269 ntBASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 AC154319.1-201ENSMUST00000216330 312 ntBASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 AL589735.1-201ENSMUST00000224353 270 ntBASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 AC110817.1-201ENSMUST00000225706 605 ntBASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC18.55■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms