Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.39
Col8a1Q00780 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Col8a1Q00780 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Col8a1Q00780 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC12.58□□□□□ -0.4
Col8a1Q00780 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col8a1Q00780 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col8a1Q00780 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC12.58□□□□□ -0.4
Col8a1Q00780 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col8a1Q00780 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col8a1Q00780 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col8a1Q00780 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Col8a1Q00780 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Col8a1Q00780 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC12.58□□□□□ -0.4
Col8a1Q00780 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC12.58□□□□□ -0.4
Col8a1Q00780 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col8a1Q00780 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col8a1Q00780 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col8a1Q00780 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col8a1Q00780 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col8a1Q00780 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col8a1Q00780 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col8a1Q00780 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Col8a1Q00780 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Col8a1Q00780 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Col8a1Q00780 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Col8a1Q00780 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC12.57□□□□□ -0.4
Col8a1Q00780 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC12.57□□□□□ -0.4
Col8a1Q00780 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Gm45195-201ENSMUST00000205597 1008 ntBASIC12.57□□□□□ -0.4
Col8a1Q00780 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC12.57□□□□□ -0.4
Col8a1Q00780 AC158529.1-201ENSMUST00000223618 239 ntBASIC12.57□□□□□ -0.4
Col8a1Q00780 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Col8a1Q00780 Gm20445-201ENSMUST00000061905 565 ntBASIC12.57□□□□□ -0.4
Col8a1Q00780 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC12.57□□□□□ -0.4
Col8a1Q00780 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Asic1-205ENSMUST00000228185 1818 ntBASIC12.57□□□□□ -0.4
Col8a1Q00780 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Col8a1Q00780 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
Col8a1Q00780 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Gm5320-201ENSMUST00000207163 1519 ntBASIC12.57□□□□□ -0.4
Col8a1Q00780 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col8a1Q00780 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
Col8a1Q00780 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC12.56□□□□□ -0.4
Col8a1Q00780 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC12.56□□□□□ -0.4
Col8a1Q00780 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Col8a1Q00780 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Col8a1Q00780 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Col8a1Q00780 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Gm11425-201ENSMUST00000119608 498 ntBASIC12.56□□□□□ -0.4
Col8a1Q00780 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC12.56□□□□□ -0.4
Col8a1Q00780 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC12.56□□□□□ -0.4
Col8a1Q00780 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 AC160980.1-201ENSMUST00000224136 970 ntBASIC12.56□□□□□ -0.4
Col8a1Q00780 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Col8a1Q00780 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Gm9396-201ENSMUST00000076703 567 ntBASIC12.56□□□□□ -0.4
Col8a1Q00780 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col8a1Q00780 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms