Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Scn1bP97952 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.24
Scn1bP97952 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Scn1bP97952 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn1bP97952 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Scn1bP97952 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn1bP97952 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn1bP97952 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Scn1bP97952 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn1bP97952 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn1bP97952 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Scn1bP97952 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Scn1bP97952 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC13.51□□□□□ -0.25
Scn1bP97952 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Scn1bP97952 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Scn1bP97952 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC13.51□□□□□ -0.25
Scn1bP97952 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Scn1bP97952 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Scn1bP97952 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Gm14722-201ENSMUST00000118943 689 ntBASIC13.51□□□□□ -0.25
Scn1bP97952 Gm11860-201ENSMUST00000122346 1010 ntBASIC13.51□□□□□ -0.25
Scn1bP97952 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC13.51□□□□□ -0.25
Scn1bP97952 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Scn1bP97952 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Gm43056-201ENSMUST00000197865 2791 ntBASIC13.51□□□□□ -0.25
Scn1bP97952 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC13.51□□□□□ -0.25
Scn1bP97952 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC13.51□□□□□ -0.25
Scn1bP97952 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Scn1bP97952 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Scn1bP97952 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Scn1bP97952 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Scn1bP97952 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC13.5□□□□□ -0.25
Scn1bP97952 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC13.5□□□□□ -0.25
Scn1bP97952 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC13.5□□□□□ -0.25
Scn1bP97952 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC13.5□□□□□ -0.25
Scn1bP97952 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Gm8242-201ENSMUST00000193029 1420 ntBASIC13.5□□□□□ -0.25
Scn1bP97952 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
Scn1bP97952 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC13.5□□□□□ -0.25
Scn1bP97952 Gm7556-201ENSMUST00000201178 1084 ntBASIC13.5□□□□□ -0.25
Scn1bP97952 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC13.5□□□□□ -0.25
Scn1bP97952 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Scn1bP97952 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
Scn1bP97952 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Scn1bP97952 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Scn1bP97952 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Scn1bP97952 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
Scn1bP97952 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
Scn1bP97952 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Scn1bP97952 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Scn1bP97952 Zkscan4-202ENSMUST00000225845 1506 ntBASIC13.49□□□□□ -0.25
Scn1bP97952 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Scn1bP97952 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Scn1bP97952 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Scn1bP97952 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Scn1bP97952 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms