Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Rfx1P48377 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC17.66■□□□□ 0.42
Rfx1P48377 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Rfx1P48377 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC17.66■□□□□ 0.42
Rfx1P48377 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Gm45779-201ENSMUST00000212189 4064 ntBASIC17.66■□□□□ 0.42
Rfx1P48377 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Rfx1P48377 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Acot6-202ENSMUST00000222921 3622 ntBASIC17.65■□□□□ 0.42
Rfx1P48377 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Rfx1P48377 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Gm15372-201ENSMUST00000120729 834 ntBASIC17.65■□□□□ 0.42
Rfx1P48377 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Rfx1P48377 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC17.65■□□□□ 0.42
Rfx1P48377 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
Rfx1P48377 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC17.65■□□□□ 0.42
Rfx1P48377 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Rfx1P48377 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Rfx1P48377 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC17.65■□□□□ 0.42
Rfx1P48377 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Rfx1P48377 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Rfx1P48377 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Rfx1P48377 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.42
Rfx1P48377 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx1P48377 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx1P48377 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx1P48377 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC17.64■□□□□ 0.41
Rfx1P48377 Gm12895-201ENSMUST00000122214 226 ntBASIC17.64■□□□□ 0.41
Rfx1P48377 Gm7284-201ENSMUST00000131667 944 ntBASIC17.64■□□□□ 0.41
Rfx1P48377 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
Rfx1P48377 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC17.64■□□□□ 0.41
Rfx1P48377 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx1P48377 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx1P48377 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Rfx1P48377 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx1P48377 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx1P48377 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx1P48377 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx1P48377 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC17.64■□□□□ 0.41
Rfx1P48377 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx1P48377 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx1P48377 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx1P48377 Gm5184-201ENSMUST00000220417 1702 ntBASIC17.64■□□□□ 0.41
Rfx1P48377 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx1P48377 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rfx1P48377 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Rfx1P48377 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
Rfx1P48377 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Rfx1P48377 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Rfx1P48377 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 AC164567.1-201ENSMUST00000219185 960 ntBASIC17.63■□□□□ 0.41
Rfx1P48377 AC159106.1-201ENSMUST00000224421 690 ntBASIC17.63■□□□□ 0.41
Rfx1P48377 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Rfx1P48377 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rfx1P48377 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms