Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC19.23■□□□□ 0.67
Col18a1P39061 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC19.23■□□□□ 0.67
Col18a1P39061 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC19.23■□□□□ 0.67
Col18a1P39061 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
Col18a1P39061 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col18a1P39061 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col18a1P39061 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col18a1P39061 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col18a1P39061 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col18a1P39061 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC19.22■□□□□ 0.67
Col18a1P39061 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col18a1P39061 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col18a1P39061 Gm7895-201ENSMUST00000187459 1173 ntBASIC19.22■□□□□ 0.67
Col18a1P39061 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC19.22■□□□□ 0.67
Col18a1P39061 Gm4971-201ENSMUST00000205991 1108 ntBASIC19.22■□□□□ 0.67
Col18a1P39061 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col18a1P39061 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Col18a1P39061 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col18a1P39061 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col18a1P39061 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col18a1P39061 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC19.22■□□□□ 0.67
Col18a1P39061 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col18a1P39061 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col18a1P39061 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Col18a1P39061 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Gm44364-201ENSMUST00000198368 141 ntBASIC19.21■□□□□ 0.67
Col18a1P39061 Gm18753-201ENSMUST00000201000 566 ntBASIC19.21■□□□□ 0.67
Col18a1P39061 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC19.21■□□□□ 0.67
Col18a1P39061 Gm45865-201ENSMUST00000211815 945 ntBASIC19.21■□□□□ 0.67
Col18a1P39061 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Col18a1P39061 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Mir877-201ENSMUST00000104738 85 ntBASIC19.21■□□□□ 0.67
Col18a1P39061 Gm15371-201ENSMUST00000117057 784 ntBASIC19.21■□□□□ 0.67
Col18a1P39061 Gm1335-201ENSMUST00000121653 386 ntBASIC19.21■□□□□ 0.67
Col18a1P39061 Gm12749-201ENSMUST00000122138 1159 ntBASIC19.21■□□□□ 0.67
Col18a1P39061 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC19.21■□□□□ 0.67
Col18a1P39061 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Snora73a-201ENSMUST00000082453 205 ntBASIC19.21■□□□□ 0.67
Col18a1P39061 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Col18a1P39061 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col18a1P39061 AC168058.1-201ENSMUST00000219521 2282 ntBASIC19.21■□□□□ 0.67
Col18a1P39061 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Col18a1P39061 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col18a1P39061 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC19.2■□□□□ 0.66
Col18a1P39061 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col18a1P39061 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col18a1P39061 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC19.2■□□□□ 0.66
Col18a1P39061 Gm6203-201ENSMUST00000209575 1342 ntBASIC19.2■□□□□ 0.66
Col18a1P39061 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col18a1P39061 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC19.2■□□□□ 0.66
Col18a1P39061 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col18a1P39061 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC19.2■□□□□ 0.66
Col18a1P39061 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col18a1P39061 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC19.2■□□□□ 0.66
Col18a1P39061 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col18a1P39061 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col18a1P39061 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Col18a1P39061 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col18a1P39061 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col18a1P39061 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col18a1P39061 Gm37008-201ENSMUST00000195712 319 ntBASIC19.19■□□□□ 0.66
Col18a1P39061 Gm6334-201ENSMUST00000207083 228 ntBASIC19.19■□□□□ 0.66
Col18a1P39061 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col18a1P39061 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col18a1P39061 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col18a1P39061 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col18a1P39061 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Col18a1P39061 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col18a1P39061 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC19.19■□□□□ 0.66
Col18a1P39061 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col18a1P39061 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col18a1P39061 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Col18a1P39061 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col18a1P39061 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Col18a1P39061 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Col18a1P39061 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Col18a1P39061 Gm29396-201ENSMUST00000185659 716 ntBASIC19.19■□□□□ 0.66
Col18a1P39061 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col18a1P39061 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.18■□□□□ 0.66
Col18a1P39061 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col18a1P39061 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col18a1P39061 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col18a1P39061 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Col18a1P39061 Gm14730-201ENSMUST00000122378 1045 ntBASIC19.18■□□□□ 0.66
Col18a1P39061 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col18a1P39061 Gm7498-201ENSMUST00000203282 1084 ntBASIC19.18■□□□□ 0.66
Col18a1P39061 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms