Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm24513-201ENSMUST00000174964 138 ntBASIC14.02□□□□□ -0.17
Lire1P11260 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC14.02□□□□□ -0.17
Lire1P11260 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Lire1P11260 AC084391.1-201ENSMUST00000200651 141 ntBASIC14.02□□□□□ -0.17
Lire1P11260 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Lire1P11260 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC14.02□□□□□ -0.17
Lire1P11260 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lire1P11260 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lire1P11260 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lire1P11260 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Lire1P11260 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lire1P11260 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lire1P11260 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lire1P11260 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lire1P11260 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Lire1P11260 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lire1P11260 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lire1P11260 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC14.01□□□□□ -0.17
Lire1P11260 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Lire1P11260 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC14.01□□□□□ -0.17
Lire1P11260 AC131586.3-201ENSMUST00000228355 1367 ntBASIC14.01□□□□□ -0.17
Lire1P11260 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Lire1P11260 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC14.01□□□□□ -0.17
Lire1P11260 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Gm13036-201ENSMUST00000117799 748 ntBASIC14.01□□□□□ -0.17
Lire1P11260 Gm8097-201ENSMUST00000117903 829 ntBASIC14.01□□□□□ -0.17
Lire1P11260 Gm12260-201ENSMUST00000122447 411 ntBASIC14.01□□□□□ -0.17
Lire1P11260 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Lire1P11260 Gm11780-201ENSMUST00000136880 516 ntBASIC14.01□□□□□ -0.17
Lire1P11260 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC14.01□□□□□ -0.17
Lire1P11260 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Lire1P11260 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
Lire1P11260 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
Lire1P11260 Gm43575-201ENSMUST00000196420 516 ntBASIC14.01□□□□□ -0.17
Lire1P11260 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Lire1P11260 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Lire1P11260 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Lire1P11260 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC14.01□□□□□ -0.17
Lire1P11260 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lire1P11260 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Lire1P11260 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Gm37500-201ENSMUST00000192059 1443 ntBASIC14□□□□□ -0.17
Lire1P11260 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC14□□□□□ -0.17
Lire1P11260 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Gm3928-201ENSMUST00000121141 1307 ntBASIC14□□□□□ -0.17
Lire1P11260 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Lire1P11260 Gm14494-201ENSMUST00000118786 435 ntBASIC14□□□□□ -0.17
Lire1P11260 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
Lire1P11260 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC14□□□□□ -0.17
Lire1P11260 Gm27397-201ENSMUST00000184997 107 ntBASIC14□□□□□ -0.17
Lire1P11260 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC14□□□□□ -0.17
Lire1P11260 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
Lire1P11260 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Lire1P11260 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lire1P11260 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC14□□□□□ -0.17
Lire1P11260 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms