Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cops4O88544 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cops4O88544 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cops4O88544 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC13.66□□□□□ -0.22
Cops4O88544 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cops4O88544 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cops4O88544 Gm44981-201ENSMUST00000205549 1943 ntBASIC13.66□□□□□ -0.22
Cops4O88544 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Cops4O88544 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Cops4O88544 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cops4O88544 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cops4O88544 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cops4O88544 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC13.66□□□□□ -0.22
Cops4O88544 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cops4O88544 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Cops4O88544 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
Cops4O88544 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Cops4O88544 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Gm37691-201ENSMUST00000192147 2573 ntBASIC13.65□□□□□ -0.22
Cops4O88544 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
Cops4O88544 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Cops4O88544 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
Cops4O88544 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC13.65□□□□□ -0.22
Cops4O88544 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC13.65□□□□□ -0.22
Cops4O88544 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
Cops4O88544 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC13.65□□□□□ -0.22
Cops4O88544 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC13.65□□□□□ -0.22
Cops4O88544 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
Cops4O88544 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC13.65□□□□□ -0.22
Cops4O88544 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cops4O88544 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.23
Cops4O88544 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC13.65□□□□□ -0.23
Cops4O88544 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 CT030684.3-201ENSMUST00000227308 2445 ntBASIC13.64□□□□□ -0.23
Cops4O88544 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Cops4O88544 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC13.64□□□□□ -0.23
Cops4O88544 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Cops4O88544 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Cops4O88544 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC13.64□□□□□ -0.23
Cops4O88544 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Cops4O88544 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC13.64□□□□□ -0.23
Cops4O88544 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC13.64□□□□□ -0.23
Cops4O88544 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC13.64□□□□□ -0.23
Cops4O88544 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC13.64□□□□□ -0.23
Cops4O88544 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Gm19863-201ENSMUST00000192480 2218 ntBASIC13.64□□□□□ -0.23
Cops4O88544 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Cops4O88544 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cops4O88544 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cops4O88544 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cops4O88544 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
Cops4O88544 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cops4O88544 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cops4O88544 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Cops4O88544 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cops4O88544 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cops4O88544 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Cops4O88544 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cops4O88544 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cops4O88544 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC13.63□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms