Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smarce1O54941 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Smarce1O54941 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Smarce1O54941 Rps4l-201ENSMUST00000071745 943 ntBASIC17.56■□□□□ 0.4
Smarce1O54941 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smarce1O54941 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smarce1O54941 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smarce1O54941 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smarce1O54941 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smarce1O54941 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Smarce1O54941 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smarce1O54941 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Smarce1O54941 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smarce1O54941 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
Smarce1O54941 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Smarce1O54941 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 AC130669.1-201ENSMUST00000228537 1672 ntBASIC17.55■□□□□ 0.4
Smarce1O54941 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC17.55■□□□□ 0.4
Smarce1O54941 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Smarce1O54941 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Gm7230-201ENSMUST00000173026 815 ntBASIC17.55■□□□□ 0.4
Smarce1O54941 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Smarce1O54941 Gm27459-201ENSMUST00000184860 107 ntBASIC17.55■□□□□ 0.4
Smarce1O54941 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC17.55■□□□□ 0.4
Smarce1O54941 Gm6376-201ENSMUST00000209407 580 ntBASIC17.55■□□□□ 0.4
Smarce1O54941 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
Smarce1O54941 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smarce1O54941 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Smarce1O54941 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Best4-ps-201ENSMUST00000129783 1380 ntBASIC17.54■□□□□ 0.4
Smarce1O54941 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC17.54■□□□□ 0.4
Smarce1O54941 Trav13-3-201ENSMUST00000117226 336 ntBASIC17.54■□□□□ 0.4
Smarce1O54941 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Smarce1O54941 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC17.54■□□□□ 0.4
Smarce1O54941 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
Smarce1O54941 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC17.54■□□□□ 0.4
Smarce1O54941 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smarce1O54941 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Smarce1O54941 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smarce1O54941 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smarce1O54941 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smarce1O54941 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smarce1O54941 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Smarce1O54941 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smarce1O54941 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Smarce1O54941 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC17.53■□□□□ 0.4
Smarce1O54941 Gm15593-201ENSMUST00000122085 1008 ntBASIC17.53■□□□□ 0.4
Smarce1O54941 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Smarce1O54941 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Smarce1O54941 Gm18246-201ENSMUST00000221023 728 ntBASIC17.53■□□□□ 0.4
Smarce1O54941 AC147366.1-201ENSMUST00000227671 852 ntBASIC17.53■□□□□ 0.4
Smarce1O54941 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smarce1O54941 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smarce1O54941 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
Smarce1O54941 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smarce1O54941 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
Smarce1O54941 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Smarce1O54941 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smarce1O54941 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC17.53■□□□□ 0.4
Smarce1O54941 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Smarce1O54941 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smarce1O54941 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smarce1O54941 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Smarce1O54941 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
Smarce1O54941 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 63.8 ms