Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Lima1Q9ERG0 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Gm10819-201ENSMUST00000099988 561 ntBASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Lima1Q9ERG0 Gm44645-201ENSMUST00000205492 1653 ntBASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Gm28182-201ENSMUST00000188354 2477 ntBASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Lima1Q9ERG0 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Lima1Q9ERG0 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Lima1Q9ERG0 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
Lima1Q9ERG0 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Lima1Q9ERG0 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Lima1Q9ERG0 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC14.6□□□□□ -0.07
Lima1Q9ERG0 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lima1Q9ERG0 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lima1Q9ERG0 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lima1Q9ERG0 Gm19863-201ENSMUST00000192480 2218 ntBASIC14.6□□□□□ -0.07
Lima1Q9ERG0 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Lima1Q9ERG0 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms