Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Gm5637-201ENSMUST00000153890 1119 ntBASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Upf1Q9EPU0 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Gm27682-201ENSMUST00000183930 110 ntBASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Gm37230-201ENSMUST00000194491 818 ntBASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Snora73a-201ENSMUST00000082453 205 ntBASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf1Q9EPU0 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Gm16342-201ENSMUST00000124025 1025 ntBASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Gm18905-201ENSMUST00000205454 928 ntBASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf1Q9EPU0 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Ankra2-208ENSMUST00000226100 1476 ntBASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Gm20482-202ENSMUST00000174729 825 ntBASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Gm16401-202ENSMUST00000197463 2074 ntBASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf1Q9EPU0 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Gm8805-201ENSMUST00000117848 313 ntBASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Gm8810-201ENSMUST00000172895 754 ntBASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Proscos-202ENSMUST00000178990 666 ntBASIC16.54■□□□□ 0.24
Upf1Q9EPU0 AC155237.1-201ENSMUST00000226196 1279 ntBASIC16.54■□□□□ 0.24
Upf1Q9EPU0 AC121598.1-201ENSMUST00000228224 1019 ntBASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Rarb-207ENSMUST00000225921 2756 ntBASIC16.54■□□□□ 0.24
Upf1Q9EPU0 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf1Q9EPU0 Gm38037-201ENSMUST00000192600 1624 ntBASIC16.53■□□□□ 0.24
Upf1Q9EPU0 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Upf1Q9EPU0 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC16.53■□□□□ 0.24
Upf1Q9EPU0 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf1Q9EPU0 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Upf1Q9EPU0 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms