Protein–RNA interactions for Protein: Q9D6Y1

Ccdc3, Coiled-coil domain-containing protein 3, mousemouse

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc3Q9D6Y1 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Gm27622-201ENSMUST00000183779 60 ntBASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 AC131710.1-201ENSMUST00000228336 990 ntBASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ccdc3Q9D6Y1 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Gm25287-201ENSMUST00000103846 110 ntBASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Gm22918-201ENSMUST00000103855 110 ntBASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 AC126408.1-201ENSMUST00000225184 523 ntBASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 CT030684.1-201ENSMUST00000227292 914 ntBASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Ccdc3Q9D6Y1 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Gm45293-201ENSMUST00000209754 1812 ntBASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Ccdc3Q9D6Y1 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms