Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm10605-202ENSMUST00000183019 3198 ntBASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Gm27301-201ENSMUST00000184012 127 ntBASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Gm17968-201ENSMUST00000194902 784 ntBASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Gm44945-201ENSMUST00000206764 1187 ntBASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Gm45133-201ENSMUST00000207548 2773 ntBASIC15.53■□□□□ 0.08
Ddx56Q9D0R4 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Gm8749-201ENSMUST00000117737 331 ntBASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Gm13464-201ENSMUST00000119418 935 ntBASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Gm18206-201ENSMUST00000207027 926 ntBASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Gm45747-201ENSMUST00000212203 999 ntBASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 AC154572.2-201ENSMUST00000225105 997 ntBASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ddx56Q9D0R4 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ddx56Q9D0R4 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Ddx56Q9D0R4 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ddx56Q9D0R4 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Ddx56Q9D0R4 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC15.52■□□□□ 0.07
Ddx56Q9D0R4 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ddx56Q9D0R4 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ddx56Q9D0R4 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Ddx56Q9D0R4 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Ddx56Q9D0R4 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Ddx56Q9D0R4 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ddx56Q9D0R4 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ddx56Q9D0R4 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ddx56Q9D0R4 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms