Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
Smc1aQ9CU62 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Smc1aQ9CU62 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Smc1aQ9CU62 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
Smc1aQ9CU62 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
Smc1aQ9CU62 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Smc1aQ9CU62 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Auts2-212ENSMUST00000178555 309 ntBASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Gm7063-201ENSMUST00000186840 981 ntBASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Gm7787-201ENSMUST00000216858 688 ntBASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smc1aQ9CU62 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Gm11185-201ENSMUST00000117732 1007 ntBASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Gm15920-201ENSMUST00000118998 402 ntBASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Gm11025-201ENSMUST00000140773 466 ntBASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Gm11839-201ENSMUST00000120647 1953 ntBASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smc1aQ9CU62 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Gm15358-201ENSMUST00000119249 520 ntBASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smc1aQ9CU62 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smc1aQ9CU62 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smc1aQ9CU62 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Smc1aQ9CU62 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Smc1aQ9CU62 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Smc1aQ9CU62 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Smc1aQ9CU62 Gm12620-201ENSMUST00000119791 1986 ntBASIC16.53■□□□□ 0.24
Smc1aQ9CU62 Gm12612-201ENSMUST00000140182 1986 ntBASIC16.53■□□□□ 0.24
Smc1aQ9CU62 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Smc1aQ9CU62 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Smc1aQ9CU62 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smc1aQ9CU62 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smc1aQ9CU62 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC16.53■□□□□ 0.24
Smc1aQ9CU62 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC16.53■□□□□ 0.24
Smc1aQ9CU62 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 60.4 ms