Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Gm5184-201ENSMUST00000220417 1702 ntBASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Gm27704-201ENSMUST00000185094 107 ntBASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scaf4Q6PFF0 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 AC154471.1-201ENSMUST00000224418 436 ntBASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Gm38391-201ENSMUST00000191720 4069 ntBASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Gm42471-201ENSMUST00000201457 1865 ntBASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Scaf4Q6PFF0 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Scaf4Q6PFF0 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Scaf4Q6PFF0 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Scaf4Q6PFF0 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.07
Scaf4Q6PFF0 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Scaf4Q6PFF0 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Scaf4Q6PFF0 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
Scaf4Q6PFF0 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC14.58□□□□□ -0.07
Scaf4Q6PFF0 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Scaf4Q6PFF0 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Gm7935-201ENSMUST00000100555 1278 ntBASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Gm12895-201ENSMUST00000122214 226 ntBASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Gm11780-201ENSMUST00000136880 516 ntBASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 AC159106.1-201ENSMUST00000224421 690 ntBASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms