Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Nudt18-203ENSMUST00000228768 1578 ntBASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Gm12017-201ENSMUST00000122453 1003 ntBASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Gm20949-201ENSMUST00000206478 952 ntBASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Gm18057-201ENSMUST00000208220 503 ntBASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Gm37728-201ENSMUST00000195025 2292 ntBASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Hmgb4Q6P8W9 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Mir449b-201ENSMUST00000104833 80 ntBASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Gm22175-201ENSMUST00000175007 78 ntBASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Gm2272-201ENSMUST00000194903 582 ntBASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Hmgb4Q6P8W9 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Hmgb4Q6P8W9 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb4Q6P8W9 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
Hmgb4Q6P8W9 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb4Q6P8W9 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb4Q6P8W9 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb4Q6P8W9 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb4Q6P8W9 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC15.48■□□□□ 0.07
Hmgb4Q6P8W9 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC15.48■□□□□ 0.07
Hmgb4Q6P8W9 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Hmgb4Q6P8W9 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC15.48■□□□□ 0.07
Hmgb4Q6P8W9 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC15.48■□□□□ 0.07
Hmgb4Q6P8W9 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC15.48■□□□□ 0.07
Hmgb4Q6P8W9 AC124732.2-201ENSMUST00000221977 316 ntBASIC15.48■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms