Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC13.81□□□□□ -0.2
ShhQ62226 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC13.81□□□□□ -0.2
ShhQ62226 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
ShhQ62226 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
ShhQ62226 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
ShhQ62226 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Gm12892-201ENSMUST00000117367 1146 ntBASIC13.8□□□□□ -0.2
ShhQ62226 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC13.8□□□□□ -0.2
ShhQ62226 Gm18889-201ENSMUST00000174284 929 ntBASIC13.8□□□□□ -0.2
ShhQ62226 Gm27622-201ENSMUST00000183779 60 ntBASIC13.8□□□□□ -0.2
ShhQ62226 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC13.8□□□□□ -0.2
ShhQ62226 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC13.8□□□□□ -0.2
ShhQ62226 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC13.8□□□□□ -0.2
ShhQ62226 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
ShhQ62226 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
ShhQ62226 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
ShhQ62226 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
ShhQ62226 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC13.8□□□□□ -0.2
ShhQ62226 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
ShhQ62226 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
ShhQ62226 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC13.79□□□□□ -0.2
ShhQ62226 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC13.79□□□□□ -0.2
ShhQ62226 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
ShhQ62226 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Gm6226-201ENSMUST00000117765 1146 ntBASIC13.79□□□□□ -0.2
ShhQ62226 Gm14722-201ENSMUST00000118943 689 ntBASIC13.79□□□□□ -0.2
ShhQ62226 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC13.79□□□□□ -0.2
ShhQ62226 Gm8318-201ENSMUST00000182954 872 ntBASIC13.79□□□□□ -0.2
ShhQ62226 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Gm43125-201ENSMUST00000201724 730 ntBASIC13.79□□□□□ -0.2
ShhQ62226 Gm45747-201ENSMUST00000212203 999 ntBASIC13.79□□□□□ -0.2
ShhQ62226 AC125206.2-201ENSMUST00000217454 574 ntBASIC13.79□□□□□ -0.2
ShhQ62226 AC147366.1-201ENSMUST00000227671 852 ntBASIC13.79□□□□□ -0.2
ShhQ62226 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Gm11839-201ENSMUST00000120647 1953 ntBASIC13.79□□□□□ -0.2
ShhQ62226 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC13.79□□□□□ -0.2
ShhQ62226 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
ShhQ62226 Best4-ps-201ENSMUST00000129783 1380 ntBASIC13.79□□□□□ -0.2
ShhQ62226 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
ShhQ62226 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
ShhQ62226 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
ShhQ62226 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
ShhQ62226 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
ShhQ62226 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
ShhQ62226 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
ShhQ62226 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
ShhQ62226 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
ShhQ62226 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
ShhQ62226 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms