Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Trav4d-2-201ENSMUST00000120914 335 ntBASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Gm42693-201ENSMUST00000196779 631 ntBASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 AC153872.1-201ENSMUST00000199539 128 ntBASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
Ddb1Q3U1J4 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Gm8062-201ENSMUST00000139696 444 ntBASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 AC156560.2-201ENSMUST00000221232 264 ntBASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Gm10478-201ENSMUST00000084451 396 ntBASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Gm9816-201ENSMUST00000122292 1414 ntBASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Ddb1Q3U1J4 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Mir1247-201ENSMUST00000116706 82 ntBASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Gm9726-201ENSMUST00000180321 678 ntBASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddb1Q3U1J4 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Gm17420-201ENSMUST00000164753 153 ntBASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddb1Q3U1J4 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ddb1Q3U1J4 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms