Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col6a1Q04857 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col6a1Q04857 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col6a1Q04857 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col6a1Q04857 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col6a1Q04857 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC16.34■□□□□ 0.21
Col6a1Q04857 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col6a1Q04857 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Col6a1Q04857 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.33■□□□□ 0.2
Col6a1Q04857 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Gm11478-201ENSMUST00000117851 599 ntBASIC16.33■□□□□ 0.2
Col6a1Q04857 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC16.33■□□□□ 0.2
Col6a1Q04857 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC16.33■□□□□ 0.2
Col6a1Q04857 Gm6539-201ENSMUST00000119157 1064 ntBASIC16.33■□□□□ 0.2
Col6a1Q04857 Gm15483-201ENSMUST00000120338 456 ntBASIC16.33■□□□□ 0.2
Col6a1Q04857 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC16.33■□□□□ 0.2
Col6a1Q04857 Gm8515-201ENSMUST00000194852 576 ntBASIC16.33■□□□□ 0.2
Col6a1Q04857 Gm45384-201ENSMUST00000210451 277 ntBASIC16.33■□□□□ 0.2
Col6a1Q04857 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Col6a1Q04857 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Col6a1Q04857 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Col6a1Q04857 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Col6a1Q04857 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC16.33■□□□□ 0.2
Col6a1Q04857 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Col6a1Q04857 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a1Q04857 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a1Q04857 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a1Q04857 Gm14722-201ENSMUST00000118943 689 ntBASIC16.32■□□□□ 0.2
Col6a1Q04857 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC16.32■□□□□ 0.2
Col6a1Q04857 Gm23984-201ENSMUST00000157139 203 ntBASIC16.32■□□□□ 0.2
Col6a1Q04857 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC16.32■□□□□ 0.2
Col6a1Q04857 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC16.32■□□□□ 0.2
Col6a1Q04857 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a1Q04857 Gm18062-201ENSMUST00000208020 547 ntBASIC16.32■□□□□ 0.2
Col6a1Q04857 Gm18055-201ENSMUST00000208254 547 ntBASIC16.32■□□□□ 0.2
Col6a1Q04857 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC16.32■□□□□ 0.2
Col6a1Q04857 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a1Q04857 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a1Q04857 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a1Q04857 Gm9899-201ENSMUST00000065519 555 ntBASIC16.32■□□□□ 0.2
Col6a1Q04857 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Col6a1Q04857 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
Col6a1Q04857 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a1Q04857 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a1Q04857 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a1Q04857 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
Col6a1Q04857 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a1Q04857 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC16.31■□□□□ 0.2
Col6a1Q04857 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a1Q04857 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a1Q04857 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Col6a1Q04857 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a1Q04857 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC16.31■□□□□ 0.2
Col6a1Q04857 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC16.31■□□□□ 0.2
Col6a1Q04857 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a1Q04857 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a1Q04857 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a1Q04857 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC16.31■□□□□ 0.2
Col6a1Q04857 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a1Q04857 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a1Q04857 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a1Q04857 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col6a1Q04857 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a1Q04857 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a1Q04857 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Col6a1Q04857 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Col6a1Q04857 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a1Q04857 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Col6a1Q04857 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a1Q04857 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a1Q04857 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a1Q04857 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Col6a1Q04857 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a1Q04857 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a1Q04857 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Col6a1Q04857 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Col6a1Q04857 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a1Q04857 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a1Q04857 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Col6a1Q04857 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a1Q04857 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a1Q04857 Gm12138-201ENSMUST00000122180 951 ntBASIC16.3■□□□□ 0.2
Col6a1Q04857 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC16.3■□□□□ 0.2
Col6a1Q04857 Gm29667-201ENSMUST00000190817 490 ntBASIC16.3■□□□□ 0.2
Col6a1Q04857 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a1Q04857 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a1Q04857 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms