Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Shmt1P50431 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC15.62■□□□□ 0.09
Shmt1P50431 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC15.62■□□□□ 0.09
Shmt1P50431 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC15.62■□□□□ 0.09
Shmt1P50431 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Shmt1P50431 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC15.62■□□□□ 0.09
Shmt1P50431 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC15.61■□□□□ 0.09
Shmt1P50431 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Carlr-201ENSMUST00000181515 2574 ntBASIC15.61■□□□□ 0.09
Shmt1P50431 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC15.61■□□□□ 0.09
Shmt1P50431 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Shmt1P50431 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Gm8749-201ENSMUST00000117737 331 ntBASIC15.61■□□□□ 0.09
Shmt1P50431 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC15.61■□□□□ 0.09
Shmt1P50431 Gm13616-201ENSMUST00000120600 222 ntBASIC15.61■□□□□ 0.09
Shmt1P50431 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Gm4691-201ENSMUST00000182339 1000 ntBASIC15.61■□□□□ 0.09
Shmt1P50431 Mir6956-201ENSMUST00000183598 62 ntBASIC15.61■□□□□ 0.09
Shmt1P50431 Gm2451-201ENSMUST00000199447 999 ntBASIC15.61■□□□□ 0.09
Shmt1P50431 Gm10290-201ENSMUST00000200451 999 ntBASIC15.61■□□□□ 0.09
Shmt1P50431 Gm44872-201ENSMUST00000207864 420 ntBASIC15.61■□□□□ 0.09
Shmt1P50431 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC15.61■□□□□ 0.09
Shmt1P50431 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Shmt1P50431 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Shmt1P50431 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC15.6■□□□□ 0.09
Shmt1P50431 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC15.6■□□□□ 0.09
Shmt1P50431 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
Shmt1P50431 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Shmt1P50431 Gm10605-202ENSMUST00000183019 3198 ntBASIC15.6■□□□□ 0.09
Shmt1P50431 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Shmt1P50431 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
Shmt1P50431 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC15.6■□□□□ 0.09
Shmt1P50431 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC15.6■□□□□ 0.09
Shmt1P50431 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.6■□□□□ 0.09
Shmt1P50431 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Shmt1P50431 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Shmt1P50431 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Shmt1P50431 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Shmt1P50431 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC15.59■□□□□ 0.09
Shmt1P50431 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Shmt1P50431 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC15.59■□□□□ 0.09
Shmt1P50431 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Shmt1P50431 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Shmt1P50431 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms