Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col18a1P39061 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC19.28■□□□□ 0.68
Col18a1P39061 Gm8213-201ENSMUST00000118191 441 ntBASIC19.28■□□□□ 0.68
Col18a1P39061 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC19.28■□□□□ 0.68
Col18a1P39061 Olfr284-202ENSMUST00000206647 966 ntBASIC19.28■□□□□ 0.68
Col18a1P39061 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col18a1P39061 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Col18a1P39061 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col18a1P39061 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col18a1P39061 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col18a1P39061 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col18a1P39061 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Col18a1P39061 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col18a1P39061 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC19.27■□□□□ 0.68
Col18a1P39061 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col18a1P39061 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col18a1P39061 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Col18a1P39061 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col18a1P39061 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC19.27■□□□□ 0.68
Col18a1P39061 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col18a1P39061 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col18a1P39061 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col18a1P39061 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col18a1P39061 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col18a1P39061 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col18a1P39061 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col18a1P39061 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col18a1P39061 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Col18a1P39061 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC19.27■□□□□ 0.67
Col18a1P39061 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col18a1P39061 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC19.27■□□□□ 0.67
Col18a1P39061 Gm27772-201ENSMUST00000184900 187 ntBASIC19.27■□□□□ 0.67
Col18a1P39061 Ighv1-62-201ENSMUST00000193406 350 ntBASIC19.27■□□□□ 0.67
Col18a1P39061 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC19.27■□□□□ 0.67
Col18a1P39061 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col18a1P39061 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col18a1P39061 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col18a1P39061 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col18a1P39061 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col18a1P39061 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col18a1P39061 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col18a1P39061 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col18a1P39061 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col18a1P39061 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col18a1P39061 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col18a1P39061 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC19.26■□□□□ 0.67
Col18a1P39061 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col18a1P39061 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col18a1P39061 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col18a1P39061 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col18a1P39061 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Col18a1P39061 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col18a1P39061 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col18a1P39061 Gm37015-201ENSMUST00000192763 1521 ntBASIC19.25■□□□□ 0.67
Col18a1P39061 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col18a1P39061 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col18a1P39061 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col18a1P39061 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col18a1P39061 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col18a1P39061 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col18a1P39061 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col18a1P39061 Gm38000-201ENSMUST00000192390 1215 ntBASIC19.24■□□□□ 0.67
Col18a1P39061 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC19.24■□□□□ 0.67
Col18a1P39061 AC093022.1-201ENSMUST00000226949 1072 ntBASIC19.24■□□□□ 0.67
Col18a1P39061 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col18a1P39061 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col18a1P39061 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Col18a1P39061 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Col18a1P39061 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col18a1P39061 AC161252.3-201ENSMUST00000225465 1549 ntBASIC19.24■□□□□ 0.67
Col18a1P39061 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Col18a1P39061 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col18a1P39061 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col18a1P39061 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col18a1P39061 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col18a1P39061 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col18a1P39061 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col18a1P39061 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC19.24■□□□□ 0.67
Col18a1P39061 AC155637.1-201ENSMUST00000218560 636 ntBASIC19.24■□□□□ 0.67
Col18a1P39061 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col18a1P39061 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col18a1P39061 Gm5620-201ENSMUST00000077991 1348 ntBASIC19.24■□□□□ 0.67
Col18a1P39061 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col18a1P39061 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC19.24■□□□□ 0.67
Col18a1P39061 AC163637.1-201ENSMUST00000215491 1894 ntBASIC19.24■□□□□ 0.67
Col18a1P39061 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col18a1P39061 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col18a1P39061 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
Col18a1P39061 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col18a1P39061 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col18a1P39061 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col18a1P39061 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col18a1P39061 Gm12846-201ENSMUST00000120431 1373 ntBASIC19.23■□□□□ 0.67
Col18a1P39061 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC19.23■□□□□ 0.67
Col18a1P39061 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col18a1P39061 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC19.23■□□□□ 0.67
Col18a1P39061 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC19.23■□□□□ 0.67
Col18a1P39061 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC19.23■□□□□ 0.67
Col18a1P39061 Gm5850-201ENSMUST00000192923 1206 ntBASIC19.23■□□□□ 0.67
Col18a1P39061 Gm38223-201ENSMUST00000194484 695 ntBASIC19.23■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms