Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Gm10584-201ENSMUST00000207036 2628 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 AC154412.1-201ENSMUST00000226540 2786 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Msx1P13297 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Msx1P13297 Gm22065-201ENSMUST00000103753 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm22066-201ENSMUST00000103761 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm24932-201ENSMUST00000103763 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm24115-201ENSMUST00000103799 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm22190-201ENSMUST00000103827 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm22191-201ENSMUST00000103831 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm24721-201ENSMUST00000103849 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm28018-201ENSMUST00000103869 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm26399-201ENSMUST00000103937 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Msx1P13297 Tmem150cos-201ENSMUST00000143245 1216 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Gm10499-201ENSMUST00000174094 934 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Rpph1-201ENSMUST00000175096 319 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm20618-202ENSMUST00000177482 1227 ntTSL 3 BASIC14.03□□□□□ -0.16
Msx1P13297 Gm25349-201ENSMUST00000177728 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm23616-201ENSMUST00000177797 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm25871-201ENSMUST00000177816 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm24752-201ENSMUST00000178240 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm24496-201ENSMUST00000178287 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm25649-201ENSMUST00000178476 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm25548-201ENSMUST00000178681 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm23147-201ENSMUST00000178841 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm26095-201ENSMUST00000179270 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm22171-201ENSMUST00000179283 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm23936-201ENSMUST00000179354 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm22619-201ENSMUST00000179516 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm25255-201ENSMUST00000179579 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm24755-201ENSMUST00000179691 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm26506-201ENSMUST00000179692 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm25086-201ENSMUST00000179931 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm23243-201ENSMUST00000180047 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm24659-201ENSMUST00000180212 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm24169-201ENSMUST00000180244 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm23689-201ENSMUST00000180354 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm27359-201ENSMUST00000184153 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm27785-201ENSMUST00000184268 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm27466-201ENSMUST00000184396 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm27703-201ENSMUST00000184836 110 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC14.03□□□□□ -0.16
Msx1P13297 Gm18246-201ENSMUST00000221023 728 ntBASIC14.03□□□□□ -0.16
Msx1P13297 AC125117.2-201ENSMUST00000228344 1140 ntBASIC14.03□□□□□ -0.16
Msx1P13297 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Msx1P13297 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Msx1P13297 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Msx1P13297 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Msx1P13297 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Msx1P13297 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC14.03□□□□□ -0.16
Msx1P13297 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Msx1P13297 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Msx1P13297 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC14.03□□□□□ -0.16
Msx1P13297 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Msx1P13297 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Msx1P13297 Gm29361-201ENSMUST00000183323 2000 ntBASIC14.02□□□□□ -0.16
Msx1P13297 Nudt18-203ENSMUST00000228768 1578 ntBASIC14.02□□□□□ -0.16
Msx1P13297 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
Msx1P13297 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Msx1P13297 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Msx1P13297 Gm8242-201ENSMUST00000193029 1420 ntBASIC14.02□□□□□ -0.16
Msx1P13297 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msx1P13297 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msx1P13297 Gm11569-201ENSMUST00000105057 869 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Msx1P13297 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Msx1P13297 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msx1P13297 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC14.02□□□□□ -0.17
Msx1P13297 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Msx1P13297 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msx1P13297 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Msx1P13297 Gm24158-201ENSMUST00000175263 71 ntBASIC14.02□□□□□ -0.17
Msx1P13297 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Msx1P13297 Gm30437-201ENSMUST00000206086 1201 ntBASIC14.02□□□□□ -0.17
Msx1P13297 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC14.02□□□□□ -0.17
Msx1P13297 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC14.02□□□□□ -0.17
Msx1P13297 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Msx1P13297 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msx1P13297 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms