Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm15173-201ENSMUST00000122049 433 ntBASIC14.05□□□□□ -0.16
Lire1P11260 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC14.05□□□□□ -0.16
Lire1P11260 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Gm9727-201ENSMUST00000161387 555 ntBASIC14.05□□□□□ -0.16
Lire1P11260 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Lire1P11260 Gm7506-201ENSMUST00000207758 815 ntBASIC14.05□□□□□ -0.16
Lire1P11260 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 AC154222.1-201ENSMUST00000223882 475 ntBASIC14.05□□□□□ -0.16
Lire1P11260 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Gm6858-201ENSMUST00000208582 1468 ntBASIC14.05□□□□□ -0.16
Lire1P11260 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 AC132265.1-201ENSMUST00000219233 1665 ntBASIC14.04□□□□□ -0.16
Lire1P11260 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Lire1P11260 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Lire1P11260 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC14.04□□□□□ -0.16
Lire1P11260 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC14.04□□□□□ -0.16
Lire1P11260 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC14.04□□□□□ -0.16
Lire1P11260 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC14.04□□□□□ -0.16
Lire1P11260 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Lire1P11260 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC14.04□□□□□ -0.16
Lire1P11260 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lire1P11260 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lire1P11260 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lire1P11260 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC14.03□□□□□ -0.16
Lire1P11260 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Lire1P11260 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lire1P11260 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Lire1P11260 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lire1P11260 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lire1P11260 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lire1P11260 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Lire1P11260 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lire1P11260 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC14.03□□□□□ -0.16
Lire1P11260 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC14.03□□□□□ -0.16
Lire1P11260 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lire1P11260 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC14.03□□□□□ -0.16
Lire1P11260 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC14.03□□□□□ -0.16
Lire1P11260 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lire1P11260 Gm15590-201ENSMUST00000078419 552 ntBASIC14.03□□□□□ -0.16
Lire1P11260 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Lire1P11260 Gm38577-201ENSMUST00000221531 4545 ntBASIC14.03□□□□□ -0.16
Lire1P11260 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Lire1P11260 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lire1P11260 Gm5422-201ENSMUST00000050717 2721 ntBASIC14.03□□□□□ -0.16
Lire1P11260 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Lire1P11260 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lire1P11260 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Lire1P11260 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lire1P11260 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lire1P11260 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lire1P11260 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lire1P11260 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lire1P11260 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lire1P11260 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lire1P11260 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC14.02□□□□□ -0.16
Lire1P11260 Gm45504-201ENSMUST00000211407 2107 ntBASIC14.02□□□□□ -0.16
Lire1P11260 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lire1P11260 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lire1P11260 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC14.02□□□□□ -0.16
Lire1P11260 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lire1P11260 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
Lire1P11260 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Lire1P11260 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lire1P11260 Gm38058-201ENSMUST00000194323 4368 ntBASIC14.02□□□□□ -0.16
Lire1P11260 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Lire1P11260 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC14.02□□□□□ -0.17
Lire1P11260 Gm4459-201ENSMUST00000118750 468 ntBASIC14.02□□□□□ -0.17
Lire1P11260 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Lire1P11260 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms