Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col5a1O88207 Snora78-201ENSMUST00000158630 128 ntBASIC13.18□□□□□ -0.3
Col5a1O88207 Gm8835-201ENSMUST00000173096 1169 ntBASIC13.18□□□□□ -0.3
Col5a1O88207 Mir6392-201ENSMUST00000184924 108 ntBASIC13.18□□□□□ -0.3
Col5a1O88207 Gm27892-201ENSMUST00000185017 106 ntBASIC13.18□□□□□ -0.3
Col5a1O88207 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Col5a1O88207 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col5a1O88207 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col5a1O88207 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Col5a1O88207 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 AC174678.1-201ENSMUST00000228007 2749 ntBASIC13.17□□□□□ -0.3
Col5a1O88207 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Trav13-3-201ENSMUST00000117226 336 ntBASIC13.17□□□□□ -0.3
Col5a1O88207 Mir1894-201ENSMUST00000122802 81 ntBASIC13.17□□□□□ -0.3
Col5a1O88207 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC13.17□□□□□ -0.3
Col5a1O88207 Gm10275-202ENSMUST00000168697 495 ntBASIC13.17□□□□□ -0.3
Col5a1O88207 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC13.17□□□□□ -0.3
Col5a1O88207 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC13.17□□□□□ -0.3
Col5a1O88207 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 AC238811.3-201ENSMUST00000225422 709 ntBASIC13.17□□□□□ -0.3
Col5a1O88207 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC13.17□□□□□ -0.3
Col5a1O88207 Gm10275-201ENSMUST00000092620 635 ntBASIC13.17□□□□□ -0.3
Col5a1O88207 Gm43352-201ENSMUST00000196419 3065 ntBASIC13.17□□□□□ -0.3
Col5a1O88207 AC154412.1-201ENSMUST00000226540 2786 ntBASIC13.17□□□□□ -0.3
Col5a1O88207 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col5a1O88207 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Col5a1O88207 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC13.16□□□□□ -0.3
Col5a1O88207 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC13.16□□□□□ -0.3
Col5a1O88207 Gm27701-201ENSMUST00000184498 110 ntBASIC13.16□□□□□ -0.3
Col5a1O88207 CT485787.1-201ENSMUST00000225617 968 ntBASIC13.16□□□□□ -0.3
Col5a1O88207 AC123645.1-201ENSMUST00000228469 605 ntBASIC13.16□□□□□ -0.3
Col5a1O88207 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Col5a1O88207 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Gm5356-201ENSMUST00000093326 615 ntBASIC13.16□□□□□ -0.3
Col5a1O88207 Olfr582-201ENSMUST00000098212 960 ntBASIC13.16□□□□□ -0.3
Col5a1O88207 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Col5a1O88207 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Col5a1O88207 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Col5a1O88207 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC13.16□□□□□ -0.3
Col5a1O88207 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC13.16□□□□□ -0.3
Col5a1O88207 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Col5a1O88207 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC13.16□□□□□ -0.3
Col5a1O88207 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 AC114008.2-201ENSMUST00000227699 1347 ntBASIC13.16□□□□□ -0.3
Col5a1O88207 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Col5a1O88207 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col5a1O88207 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col5a1O88207 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col5a1O88207 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col5a1O88207 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col5a1O88207 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col5a1O88207 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col5a1O88207 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC13.15□□□□□ -0.3
Col5a1O88207 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col5a1O88207 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col5a1O88207 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col5a1O88207 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col5a1O88207 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col5a1O88207 Camk2g-217ENSMUST00000226630 1937 ntBASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms