Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm21451-201ENSMUST00000111062 2775 ntBASIC12.26□□□□□ -0.45
Hmgb3O54879 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC12.26□□□□□ -0.45
Hmgb3O54879 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC12.26□□□□□ -0.45
Hmgb3O54879 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 AC162938.1-201ENSMUST00000213140 2323 ntBASIC12.26□□□□□ -0.45
Hmgb3O54879 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Hmgb3O54879 Gm43399-201ENSMUST00000202546 2374 ntBASIC12.26□□□□□ -0.45
Hmgb3O54879 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
Hmgb3O54879 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
Hmgb3O54879 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC12.26□□□□□ -0.45
Hmgb3O54879 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
Hmgb3O54879 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC12.26□□□□□ -0.45
Hmgb3O54879 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC12.26□□□□□ -0.45
Hmgb3O54879 Gm27389-201ENSMUST00000183622 195 ntBASIC12.26□□□□□ -0.45
Hmgb3O54879 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC12.26□□□□□ -0.45
Hmgb3O54879 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC12.26□□□□□ -0.45
Hmgb3O54879 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Hmgb3O54879 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC12.26□□□□□ -0.45
Hmgb3O54879 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC12.25□□□□□ -0.45
Hmgb3O54879 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC12.25□□□□□ -0.45
Hmgb3O54879 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Hmgb3O54879 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC12.25□□□□□ -0.45
Hmgb3O54879 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC12.25□□□□□ -0.45
Hmgb3O54879 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
Hmgb3O54879 Gm29257-201ENSMUST00000186115 639 ntBASIC12.25□□□□□ -0.45
Hmgb3O54879 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC12.25□□□□□ -0.45
Hmgb3O54879 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC12.25□□□□□ -0.45
Hmgb3O54879 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Gm26684-202ENSMUST00000228229 8257 ntBASIC12.25□□□□□ -0.45
Hmgb3O54879 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Taok1-202ENSMUST00000058496 12409 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC12.25□□□□□ -0.45
Hmgb3O54879 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Gm43205-201ENSMUST00000198622 1968 ntBASIC12.25□□□□□ -0.45
Hmgb3O54879 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Hmgb3O54879 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Hmgb3O54879 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Tenm2-208ENSMUST00000163524 8668 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
Hmgb3O54879 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms