Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim55G3X8Y1 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim55G3X8Y1 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim55G3X8Y1 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Trim55G3X8Y1 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim55G3X8Y1 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Trim55G3X8Y1 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim55G3X8Y1 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim55G3X8Y1 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim55G3X8Y1 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim55G3X8Y1 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim55G3X8Y1 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Gm8784-201ENSMUST00000222096 1435 ntBASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Trim55G3X8Y1 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Gm44450-201ENSMUST00000199528 114 ntBASIC15.21■□□□□ 0.03
Trim55G3X8Y1 AC175538.1-201ENSMUST00000225343 1269 ntBASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Mbnl2-204ENSMUST00000227012 2390 ntBASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trim55G3X8Y1 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms