Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Gm9727-201ENSMUST00000161387 555 ntBASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Gm43514-201ENSMUST00000198852 424 ntBASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Prpf40aQ9R1C7 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 AC148324.1-201ENSMUST00000219034 4240 ntBASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Prpf40aQ9R1C7 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Celf4-206ENSMUST00000224553 1729 ntBASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Ap5m1-205ENSMUST00000227431 3757 ntBASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Prpf40aQ9R1C7 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms