Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Gm20445-201ENSMUST00000061905 565 ntBASIC17.34■□□□□ 0.37
Scn11aQ9R053 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Scn11aQ9R053 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Scn11aQ9R053 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC17.33■□□□□ 0.37
Scn11aQ9R053 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn11aQ9R053 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn11aQ9R053 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn11aQ9R053 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn11aQ9R053 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn11aQ9R053 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn11aQ9R053 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Gm18827-201ENSMUST00000188341 790 ntBASIC17.33■□□□□ 0.36
Scn11aQ9R053 Gm45331-201ENSMUST00000209868 554 ntBASIC17.33■□□□□ 0.36
Scn11aQ9R053 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC17.33■□□□□ 0.36
Scn11aQ9R053 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn11aQ9R053 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Scn11aQ9R053 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Scn11aQ9R053 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
Scn11aQ9R053 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn11aQ9R053 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
Scn11aQ9R053 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn11aQ9R053 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn11aQ9R053 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn11aQ9R053 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Scn11aQ9R053 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn11aQ9R053 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC17.32■□□□□ 0.36
Scn11aQ9R053 Gm45195-201ENSMUST00000205597 1008 ntBASIC17.32■□□□□ 0.36
Scn11aQ9R053 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn11aQ9R053 Gm8131-201ENSMUST00000213783 1570 ntBASIC17.32■□□□□ 0.36
Scn11aQ9R053 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Scn11aQ9R053 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn11aQ9R053 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn11aQ9R053 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Gm9908-201ENSMUST00000211534 448 ntBASIC17.31■□□□□ 0.36
Scn11aQ9R053 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Scn11aQ9R053 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC17.3■□□□□ 0.36
Scn11aQ9R053 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC17.3■□□□□ 0.36
Scn11aQ9R053 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Gm15824-201ENSMUST00000119516 955 ntBASIC17.3■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms