Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Gm26308-201ENSMUST00000157768 69 ntBASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 CT025555.1-201ENSMUST00000225901 1217 ntBASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Gm37728-201ENSMUST00000195025 2292 ntBASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Vps28Q9D1C8 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Gm29340-201ENSMUST00000188763 3854 ntBASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Gm15593-201ENSMUST00000122085 1008 ntBASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Chchd1-203ENSMUST00000224633 557 ntBASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Gpr146-202ENSMUST00000053120 1040 ntBASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Vps28Q9D1C8 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Gm11745-201ENSMUST00000121669 448 ntBASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Gm20553-201ENSMUST00000204205 844 ntBASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Vps28Q9D1C8 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms