Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Gm14928-201ENSMUST00000120198 477 ntBASIC17.24■□□□□ 0.35
Nup98Q6PFD9 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC17.24■□□□□ 0.35
Nup98Q6PFD9 Gm28760-201ENSMUST00000185995 736 ntBASIC17.24■□□□□ 0.35
Nup98Q6PFD9 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC17.24■□□□□ 0.35
Nup98Q6PFD9 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nup98Q6PFD9 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nup98Q6PFD9 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Gm31326-201ENSMUST00000191856 1048 ntBASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup98Q6PFD9 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Gm8515-201ENSMUST00000194852 576 ntBASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Ighv1-25-201ENSMUST00000195638 345 ntBASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 AC159006.1-201ENSMUST00000226396 258 ntBASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Nup98Q6PFD9 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Gm15678-201ENSMUST00000117573 960 ntBASIC17.21■□□□□ 0.35
Nup98Q6PFD9 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Gm15460-201ENSMUST00000118147 391 ntBASIC17.21■□□□□ 0.35
Nup98Q6PFD9 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 AC154239.3-201ENSMUST00000226933 674 ntBASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup98Q6PFD9 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Nup98Q6PFD9 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.34
Nup98Q6PFD9 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Gm12882-201ENSMUST00000121696 517 ntBASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Gm18018-201ENSMUST00000198273 408 ntBASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Gm44608-201ENSMUST00000206827 855 ntBASIC17.2■□□□□ 0.34
Nup98Q6PFD9 AC154806.6-201ENSMUST00000228192 202 ntBASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Efs-202ENSMUST00000227037 2540 ntBASIC17.2■□□□□ 0.34
Nup98Q6PFD9 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms