Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Rnf220Q6PDX6 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
Rnf220Q6PDX6 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Rnf220Q6PDX6 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Rnf220Q6PDX6 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf220Q6PDX6 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Gm42769-201ENSMUST00000198576 1659 ntBASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Gm5422-201ENSMUST00000050717 2721 ntBASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 CT009713.7-201ENSMUST00000224689 571 ntBASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf220Q6PDX6 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 73.4 ms