Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
ShhQ62226 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
ShhQ62226 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
ShhQ62226 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC13.83□□□□□ -0.2
ShhQ62226 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
ShhQ62226 Gm14127-201ENSMUST00000117906 678 ntBASIC13.83□□□□□ -0.2
ShhQ62226 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC13.83□□□□□ -0.2
ShhQ62226 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC13.83□□□□□ -0.2
ShhQ62226 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC13.83□□□□□ -0.2
ShhQ62226 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC13.83□□□□□ -0.2
ShhQ62226 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
ShhQ62226 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
ShhQ62226 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
ShhQ62226 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
ShhQ62226 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
ShhQ62226 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Ap5m1-205ENSMUST00000227431 3757 ntBASIC13.82□□□□□ -0.2
ShhQ62226 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
ShhQ62226 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC13.82□□□□□ -0.2
ShhQ62226 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC13.82□□□□□ -0.2
ShhQ62226 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC13.82□□□□□ -0.2
ShhQ62226 Gm11745-201ENSMUST00000121669 448 ntBASIC13.82□□□□□ -0.2
ShhQ62226 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC13.82□□□□□ -0.2
ShhQ62226 Rprl2-201ENSMUST00000157150 290 ntBASIC13.82□□□□□ -0.2
ShhQ62226 Gm5866-201ENSMUST00000177881 973 ntBASIC13.82□□□□□ -0.2
ShhQ62226 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC13.82□□□□□ -0.2
ShhQ62226 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
ShhQ62226 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC13.82□□□□□ -0.2
ShhQ62226 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
ShhQ62226 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC13.82□□□□□ -0.2
ShhQ62226 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Gm10605-202ENSMUST00000183019 3198 ntBASIC13.82□□□□□ -0.2
ShhQ62226 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC13.82□□□□□ -0.2
ShhQ62226 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
ShhQ62226 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC13.81□□□□□ -0.2
ShhQ62226 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC13.81□□□□□ -0.2
ShhQ62226 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Mir449b-201ENSMUST00000104833 80 ntBASIC13.81□□□□□ -0.2
ShhQ62226 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Gm13823-201ENSMUST00000119930 345 ntBASIC13.81□□□□□ -0.2
ShhQ62226 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC13.81□□□□□ -0.2
ShhQ62226 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC13.81□□□□□ -0.2
ShhQ62226 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC13.81□□□□□ -0.2
ShhQ62226 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC13.81□□□□□ -0.2
ShhQ62226 Gm27437-201ENSMUST00000183429 107 ntBASIC13.81□□□□□ -0.2
ShhQ62226 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC13.81□□□□□ -0.2
ShhQ62226 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC13.81□□□□□ -0.2
ShhQ62226 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
ShhQ62226 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ShhQ62226 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms