Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Gm13392-201ENSMUST00000117708 150 ntBASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Gm7446-201ENSMUST00000221035 1240 ntBASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Ddb1Q3U1J4 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Mir1894-201ENSMUST00000122802 81 ntBASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Gm18307-201ENSMUST00000206864 949 ntBASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Gm45667-201ENSMUST00000210380 1316 ntBASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Gm14452-201ENSMUST00000118680 1632 ntBASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC18.66■□□□□ 0.58
Ddb1Q3U1J4 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Gm5279-201ENSMUST00000199575 745 ntBASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Gm7067-201ENSMUST00000207698 1249 ntBASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Gm17794-201ENSMUST00000220252 955 ntBASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Ddb1Q3U1J4 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Ddb1Q3U1J4 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Ddb1Q3U1J4 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
Ddb1Q3U1J4 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Gm13226-201ENSMUST00000117838 404 ntBASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Ighv1-25-201ENSMUST00000195638 345 ntBASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddb1Q3U1J4 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms