Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC22.41■■□□□ 1.18
Col17a1Q07563 Gm7046-201ENSMUST00000221351 977 ntBASIC22.41■■□□□ 1.18
Col17a1Q07563 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Col17a1Q07563 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Col17a1Q07563 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Col17a1Q07563 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC22.4■■□□□ 1.18
Col17a1Q07563 Gm38327-201ENSMUST00000195852 1755 ntBASIC22.4■■□□□ 1.18
Col17a1Q07563 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Col17a1Q07563 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC22.4■■□□□ 1.18
Col17a1Q07563 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Col17a1Q07563 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Col17a1Q07563 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC22.4■■□□□ 1.18
Col17a1Q07563 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC22.4■■□□□ 1.18
Col17a1Q07563 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Col17a1Q07563 AC141438.2-201ENSMUST00000215068 271 ntBASIC22.4■■□□□ 1.18
Col17a1Q07563 AC122371.3-201ENSMUST00000223402 1061 ntBASIC22.4■■□□□ 1.18
Col17a1Q07563 AC135114.1-201ENSMUST00000228682 270 ntBASIC22.4■■□□□ 1.18
Col17a1Q07563 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Col17a1Q07563 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Col17a1Q07563 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.18
Col17a1Q07563 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.18
Col17a1Q07563 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Col17a1Q07563 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Col17a1Q07563 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Col17a1Q07563 Gm45760-201ENSMUST00000212190 1782 ntBASIC22.39■■□□□ 1.17
Col17a1Q07563 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Col17a1Q07563 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Col17a1Q07563 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Col17a1Q07563 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC22.39■■□□□ 1.17
Col17a1Q07563 Gm13216-201ENSMUST00000117145 591 ntBASIC22.39■■□□□ 1.17
Col17a1Q07563 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC22.39■■□□□ 1.17
Col17a1Q07563 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC22.39■■□□□ 1.17
Col17a1Q07563 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC22.39■■□□□ 1.17
Col17a1Q07563 Gm44545-201ENSMUST00000208262 746 ntBASIC22.39■■□□□ 1.17
Col17a1Q07563 Gm10608-202ENSMUST00000213924 676 ntBASIC22.39■■□□□ 1.17
Col17a1Q07563 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Col17a1Q07563 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
Col17a1Q07563 Gm8706-201ENSMUST00000197372 1491 ntBASIC22.39■■□□□ 1.17
Col17a1Q07563 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Col17a1Q07563 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
Col17a1Q07563 AC121598.2-201ENSMUST00000228376 2325 ntBASIC22.38■■□□□ 1.17
Col17a1Q07563 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Col17a1Q07563 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm12616-201ENSMUST00000118594 382 ntBASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm12217-201ENSMUST00000118858 696 ntBASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
Col17a1Q07563 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC22.38■■□□□ 1.17
Col17a1Q07563 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm12624-201ENSMUST00000177615 382 ntBASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm12621-201ENSMUST00000177760 382 ntBASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm12615-201ENSMUST00000177970 382 ntBASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm12622-201ENSMUST00000177975 382 ntBASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm12627-201ENSMUST00000178412 382 ntBASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm12625-201ENSMUST00000179122 382 ntBASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm12614-201ENSMUST00000179586 382 ntBASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm12613-201ENSMUST00000180323 382 ntBASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm26927-201ENSMUST00000182385 965 ntBASIC22.38■■□□□ 1.17
Col17a1Q07563 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Col17a1Q07563 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC22.38■■□□□ 1.17
Col17a1Q07563 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Col17a1Q07563 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Col17a1Q07563 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC22.38■■□□□ 1.17
Col17a1Q07563 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Col17a1Q07563 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Col17a1Q07563 Gm11331-201ENSMUST00000119764 288 ntBASIC22.37■■□□□ 1.17
Col17a1Q07563 Gm25261-201ENSMUST00000157416 134 ntBASIC22.37■■□□□ 1.17
Col17a1Q07563 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
Col17a1Q07563 Gm25927-201ENSMUST00000175058 117 ntBASIC22.37■■□□□ 1.17
Col17a1Q07563 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC22.37■■□□□ 1.17
Col17a1Q07563 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC22.37■■□□□ 1.17
Col17a1Q07563 Gm19208-201ENSMUST00000213861 912 ntBASIC22.37■■□□□ 1.17
Col17a1Q07563 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC22.37■■□□□ 1.17
Col17a1Q07563 AC140293.1-201ENSMUST00000225626 1247 ntBASIC22.37■■□□□ 1.17
Col17a1Q07563 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Col17a1Q07563 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
Col17a1Q07563 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
Col17a1Q07563 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Col17a1Q07563 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Col17a1Q07563 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Col17a1Q07563 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Col17a1Q07563 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Col17a1Q07563 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Col17a1Q07563 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Col17a1Q07563 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Col17a1Q07563 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Col17a1Q07563 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Col17a1Q07563 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
Col17a1Q07563 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Col17a1Q07563 AC123645.1-201ENSMUST00000228469 605 ntBASIC22.36■■□□□ 1.17
Col17a1Q07563 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC22.36■■□□□ 1.17
Col17a1Q07563 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC22.36■■□□□ 1.17
Col17a1Q07563 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Col17a1Q07563 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Col17a1Q07563 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Col17a1Q07563 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Col17a1Q07563 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Col17a1Q07563 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 68.7 ms