Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col8a1Q00780 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Col8a1Q00780 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Col8a1Q00780 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Col8a1Q00780 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Col8a1Q00780 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC12.63□□□□□ -0.39
Col8a1Q00780 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Col8a1Q00780 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC12.63□□□□□ -0.39
Col8a1Q00780 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Col8a1Q00780 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC12.63□□□□□ -0.39
Col8a1Q00780 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC12.63□□□□□ -0.39
Col8a1Q00780 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC12.63□□□□□ -0.39
Col8a1Q00780 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col8a1Q00780 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC12.63□□□□□ -0.39
Col8a1Q00780 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
Col8a1Q00780 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
Col8a1Q00780 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
Col8a1Q00780 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC12.62□□□□□ -0.39
Col8a1Q00780 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Col8a1Q00780 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC12.62□□□□□ -0.39
Col8a1Q00780 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Col8a1Q00780 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
Col8a1Q00780 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Col8a1Q00780 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Gm14042-201ENSMUST00000120139 833 ntBASIC12.62□□□□□ -0.39
Col8a1Q00780 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Ighv5-13-201ENSMUST00000193550 290 ntBASIC12.62□□□□□ -0.39
Col8a1Q00780 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC12.62□□□□□ -0.39
Col8a1Q00780 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Col8a1Q00780 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Col8a1Q00780 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Col8a1Q00780 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Gm9115-201ENSMUST00000120192 1348 ntBASIC12.62□□□□□ -0.39
Col8a1Q00780 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col8a1Q00780 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
Col8a1Q00780 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Gm8131-201ENSMUST00000213783 1570 ntBASIC12.61□□□□□ -0.39
Col8a1Q00780 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Col8a1Q00780 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC12.61□□□□□ -0.39
Col8a1Q00780 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC12.61□□□□□ -0.39
Col8a1Q00780 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC12.61□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms