Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC16.3■□□□□ 0.2
Hmgb1P63158 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Hmgb1P63158 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC16.3■□□□□ 0.2
Hmgb1P63158 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Gm38376-201ENSMUST00000195493 2253 ntBASIC16.3■□□□□ 0.2
Hmgb1P63158 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb1P63158 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Hmgb1P63158 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC16.29■□□□□ 0.2
Hmgb1P63158 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 AC119177.1-201ENSMUST00000227647 1332 ntBASIC16.29■□□□□ 0.2
Hmgb1P63158 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Hmgb1P63158 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Gm7153-201ENSMUST00000117092 455 ntBASIC16.29■□□□□ 0.2
Hmgb1P63158 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC16.29■□□□□ 0.2
Hmgb1P63158 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Gm23547-201ENSMUST00000158210 271 ntBASIC16.29■□□□□ 0.2
Hmgb1P63158 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Hmgb1P63158 Gm17971-201ENSMUST00000190239 806 ntBASIC16.29■□□□□ 0.2
Hmgb1P63158 Gm10060-201ENSMUST00000212002 111 ntBASIC16.29■□□□□ 0.2
Hmgb1P63158 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Hmgb1P63158 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgb1P63158 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Hmgb1P63158 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Hmgb1P63158 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC16.28■□□□□ 0.2
Hmgb1P63158 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Hmgb1P63158 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.28■□□□□ 0.2
Hmgb1P63158 Gm4899-201ENSMUST00000178708 719 ntBASIC16.28■□□□□ 0.2
Hmgb1P63158 Gm43935-201ENSMUST00000203569 1050 ntBASIC16.28■□□□□ 0.2
Hmgb1P63158 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC16.28■□□□□ 0.2
Hmgb1P63158 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC16.28■□□□□ 0.2
Hmgb1P63158 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC16.28■□□□□ 0.2
Hmgb1P63158 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Gm37297-201ENSMUST00000192974 2384 ntBASIC16.28■□□□□ 0.2
Hmgb1P63158 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC16.28■□□□□ 0.2
Hmgb1P63158 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Hmgb1P63158 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgb1P63158 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb1P63158 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb1P63158 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb1P63158 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb1P63158 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb1P63158 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgb1P63158 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms