Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Lmx1bO88609 Gm7556-201ENSMUST00000201178 1084 ntBASIC13.44□□□□□ -0.26
Lmx1bO88609 Gm43125-201ENSMUST00000201724 730 ntBASIC13.44□□□□□ -0.26
Lmx1bO88609 Gm5312-201ENSMUST00000203728 547 ntBASIC13.44□□□□□ -0.26
Lmx1bO88609 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC13.44□□□□□ -0.26
Lmx1bO88609 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC13.44□□□□□ -0.26
Lmx1bO88609 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Lmx1bO88609 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Lmx1bO88609 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Lmx1bO88609 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Lmx1bO88609 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Lmx1bO88609 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC13.44□□□□□ -0.26
Lmx1bO88609 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Lmx1bO88609 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC13.44□□□□□ -0.26
Lmx1bO88609 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Lmx1bO88609 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC13.43□□□□□ -0.26
Lmx1bO88609 Gm6018-201ENSMUST00000216090 1306 ntBASIC13.43□□□□□ -0.26
Lmx1bO88609 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Lmx1bO88609 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Lmx1bO88609 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Lmx1bO88609 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC13.43□□□□□ -0.26
Lmx1bO88609 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC13.43□□□□□ -0.26
Lmx1bO88609 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC13.43□□□□□ -0.26
Lmx1bO88609 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC13.43□□□□□ -0.26
Lmx1bO88609 Mir6956-201ENSMUST00000183598 62 ntBASIC13.43□□□□□ -0.26
Lmx1bO88609 Gm37171-201ENSMUST00000192636 1185 ntBASIC13.43□□□□□ -0.26
Lmx1bO88609 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 CT009510.1-201ENSMUST00000227972 270 ntBASIC13.43□□□□□ -0.26
Lmx1bO88609 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Lmx1bO88609 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Gm37305-201ENSMUST00000195714 4279 ntBASIC13.42□□□□□ -0.26
Lmx1bO88609 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC13.42□□□□□ -0.26
Lmx1bO88609 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Lmx1bO88609 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC13.42□□□□□ -0.26
Lmx1bO88609 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Gm10605-202ENSMUST00000183019 3198 ntBASIC13.42□□□□□ -0.26
Lmx1bO88609 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Lmx1bO88609 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC13.42□□□□□ -0.26
Lmx1bO88609 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC13.42□□□□□ -0.26
Lmx1bO88609 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC13.42□□□□□ -0.26
Lmx1bO88609 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC13.42□□□□□ -0.26
Lmx1bO88609 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Lmx1bO88609 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Efs-202ENSMUST00000227037 2540 ntBASIC13.42□□□□□ -0.26
Lmx1bO88609 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Lmx1bO88609 CT025626.1-201ENSMUST00000223735 1455 ntBASIC13.42□□□□□ -0.26
Lmx1bO88609 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Lmx1bO88609 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lmx1bO88609 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Lmx1bO88609 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC13.41□□□□□ -0.26
Lmx1bO88609 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Lmx1bO88609 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC13.41□□□□□ -0.26
Lmx1bO88609 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC13.41□□□□□ -0.26
Lmx1bO88609 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lmx1bO88609 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Lmx1bO88609 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lmx1bO88609 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lmx1bO88609 Gm15920-201ENSMUST00000118998 402 ntBASIC13.41□□□□□ -0.26
Lmx1bO88609 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC13.41□□□□□ -0.26
Lmx1bO88609 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lmx1bO88609 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC13.41□□□□□ -0.26
Lmx1bO88609 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC13.41□□□□□ -0.26
Lmx1bO88609 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC13.41□□□□□ -0.26
Lmx1bO88609 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Lmx1bO88609 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lmx1bO88609 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Lmx1bO88609 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms