Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC14.28□□□□□ -0.12
Clk4O35493 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clk4O35493 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clk4O35493 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clk4O35493 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clk4O35493 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clk4O35493 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Clk4O35493 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clk4O35493 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Clk4O35493 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Clk4O35493 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clk4O35493 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clk4O35493 Gm42829-201ENSMUST00000198417 2585 ntBASIC14.27□□□□□ -0.13
Clk4O35493 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC14.27□□□□□ -0.13
Clk4O35493 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC14.27□□□□□ -0.13
Clk4O35493 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC14.27□□□□□ -0.13
Clk4O35493 Gm2272-201ENSMUST00000194903 582 ntBASIC14.27□□□□□ -0.13
Clk4O35493 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC14.27□□□□□ -0.13
Clk4O35493 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clk4O35493 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Clk4O35493 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clk4O35493 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
Clk4O35493 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Clk4O35493 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clk4O35493 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
Clk4O35493 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC14.27□□□□□ -0.13
Clk4O35493 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clk4O35493 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clk4O35493 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clk4O35493 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Clk4O35493 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC14.26□□□□□ -0.13
Clk4O35493 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Clk4O35493 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Clk4O35493 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC14.26□□□□□ -0.13
Clk4O35493 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC14.26□□□□□ -0.13
Clk4O35493 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC14.26□□□□□ -0.13
Clk4O35493 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC14.26□□□□□ -0.13
Clk4O35493 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC14.26□□□□□ -0.13
Clk4O35493 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Clk4O35493 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC14.26□□□□□ -0.13
Clk4O35493 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clk4O35493 Gm29361-201ENSMUST00000183323 2000 ntBASIC14.25□□□□□ -0.13
Clk4O35493 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Clk4O35493 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
Clk4O35493 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Gm37728-201ENSMUST00000195025 2292 ntBASIC14.25□□□□□ -0.13
Clk4O35493 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
Clk4O35493 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Gm15467-201ENSMUST00000120582 445 ntBASIC14.25□□□□□ -0.13
Clk4O35493 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
Clk4O35493 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Clk4O35493 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC14.25□□□□□ -0.13
Clk4O35493 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Clk4O35493 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC14.25□□□□□ -0.13
Clk4O35493 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC14.25□□□□□ -0.13
Clk4O35493 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC14.25□□□□□ -0.13
Clk4O35493 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Gm5049-201ENSMUST00000195878 1590 ntBASIC14.25□□□□□ -0.13
Clk4O35493 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Clk4O35493 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clk4O35493 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC14.25□□□□□ -0.13
Clk4O35493 Ankra2-208ENSMUST00000226100 1476 ntBASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms