Protein–RNA interactions for Protein: B9EHT4

Clip3, CAP-Gly domain-containing linker protein 3, mousemouse

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip3B9EHT4 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Gm10175-201ENSMUST00000086013 645 ntBASIC14.39□□□□□ -0.11
Clip3B9EHT4 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Clip3B9EHT4 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Gm43697-201ENSMUST00000199637 2581 ntBASIC14.38□□□□□ -0.11
Clip3B9EHT4 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC14.38□□□□□ -0.11
Clip3B9EHT4 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Clip3B9EHT4 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Gm17968-201ENSMUST00000194902 784 ntBASIC14.38□□□□□ -0.11
Clip3B9EHT4 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Gm7901-201ENSMUST00000120430 1597 ntBASIC14.38□□□□□ -0.11
Clip3B9EHT4 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC14.38□□□□□ -0.11
Clip3B9EHT4 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC14.37□□□□□ -0.11
Clip3B9EHT4 AC154572.2-201ENSMUST00000225105 997 ntBASIC14.37□□□□□ -0.11
Clip3B9EHT4 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clip3B9EHT4 AC119177.1-201ENSMUST00000227647 1332 ntBASIC14.37□□□□□ -0.11
Clip3B9EHT4 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clip3B9EHT4 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Clip3B9EHT4 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Ntrk2-208ENSMUST00000225583 2719 ntBASIC14.36□□□□□ -0.11
Clip3B9EHT4 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Clip3B9EHT4 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms