Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Gm27494-201ENSMUST00000184735 189 ntBASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC15.22■□□□□ 0.03
Vps28Q9D1C8 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps28Q9D1C8 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Nrn1-204ENSMUST00000224323 1779 ntBASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Mir1895-201ENSMUST00000122615 79 ntBASIC15.21■□□□□ 0.03
Vps28Q9D1C8 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Gm43767-201ENSMUST00000198933 381 ntBASIC15.21■□□□□ 0.03
Vps28Q9D1C8 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Vps28Q9D1C8 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Vps28Q9D1C8 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Vps28Q9D1C8 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Vps28Q9D1C8 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Vps28Q9D1C8 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Vps28Q9D1C8 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Vps28Q9D1C8 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
Vps28Q9D1C8 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Gm11839-201ENSMUST00000120647 1953 ntBASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Gm9768-201ENSMUST00000206007 2861 ntBASIC15.2■□□□□ 0.02
Vps28Q9D1C8 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Rpph1-201ENSMUST00000175096 319 ntBASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Gm45612-201ENSMUST00000211320 160 ntBASIC15.2■□□□□ 0.02
Vps28Q9D1C8 AC164567.1-201ENSMUST00000219185 960 ntBASIC15.2■□□□□ 0.02
Vps28Q9D1C8 AC155252.2-201ENSMUST00000226946 680 ntBASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps28Q9D1C8 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 58.4 ms